Keyword - Computational Biology

Federated privacy-protected meta- and mega-omics data analysis in multi-center studies with a fully open-source analytic platform.
Escriba-Montagut, Xavier; Marcon, Yannick; Anguita-Ruiz, Augusto; Avraam, Demetris; Urquiza, Jose; Morgan, Andrei S; Wilson, Rebecca C; Burton, Paul; Gonzalez, Juan R
PLoS Comput Biol, Volume 20, Issue 12 (2024)
PMID: 39652598 DOI: 10.1371/journal.pcbi.1012626 
Citations: 1 (Scopus)
Tags: Consortia: ATHLETE | Consortia: CERCA | Consortia: CINECA | Consortia: Consolidated Group on Health Analytics | Consortia: EUCAN-Connect | Consortia: IBEC | Consortia: PERIS | Type: software engineering

MOLGENIS Armadillo: a lightweight server for federated analysis using DataSHIELD.
Cadman, Tim; Slofstra, Mariska K; van der Geest, Marije A; Avraam, Demetris; Bishop, Tom R P; de Boer, Tommy; Duijts, Liesbeth; Haakma, Sido; Hyde, Eleanor; Jaddoe, Vincent; Karramass, Tarik; Kelpin, Fleur; Marcon, Yannick; Pinot de Moira, Angela; Postma, Dick; Tolboom, Clemens; Veenstra, Ruben L; Wheater, Stuart; Welten, Marieke; Wilson, Rebecca C; Zwart, Erik; Swertz, Morris
Bioinformatics, Volume 41, Issue 1 (2024)
PMID: 39673440 DOI: 10.1093/bioinformatics/btae726 
Citations: 1 (Scopus)
Tags: Consortia: ATHLETE | Consortia: EUCAN-Connect | Consortia: LifeCycle | Type: data systems | Type: software engineering

DataSHIELD: taking the analysis to the data, not the data to the analysis.
Gaye, Amadou; Marcon, Yannick; Isaeva, Julia; LaFlamme, Philippe; Turner, Andrew; Jones, Elinor M; Minion, Joel; Boyd, Andrew W; Newby, Christopher J; Nuotio, Marja-Liisa; Wilson, Rebecca; Butters, Oliver; Murtagh, Barnaby; Demir, Ipek; Doiron, Dany; Giepmans, Lisette; Wallace, Susan E; Budin-Ljøsne, Isabelle; Oliver Schmidt, Carsten; Boffetta, Paolo; Boniol, Mathieu; Bota, Maria; Carter, Kim W; deKlerk, Nick; Dibben, Chris; Francis, Richard W; Hiekkalinna, Tero; Hveem, Kristian; Kvaløy, Kirsti; Millar, Sean; Perry, Ivan J; Peters, Annette; Phillips, Catherine M; Popham, Frank; Raab, Gillian; Reischl, Eva; Sheehan, Nuala; Waldenberger, Melanie; Perola, Markus; van den Heuvel, Edwin; Macleod, John; Knoppers, Bartha M; Stolk, Ronald P; Fortier, Isabel; Harris, Jennifer R; Woffenbuttel, Bruce H R; Murtagh, Madeleine J; Ferretti, Vincent; Burton, Paul R
Int J Epidemiol, Volume 43, Issue 6 (2014)
PMID: 25261970 DOI: 10.1093/ije/dyu188 
Citations: 204 (Scopus)
Tags: Consortia: BBMRI-LPC | Consortia: BioSHaRE-EU | Consortia: Welsh and Scottish Farr Institutes | Study: CHRIS | Study: FINRISK 2007 | Study: HUNT | Study: KORA | Study: Lifelines | Study: MICROS | Study: Mitchelstown | Study: NCDS | Study: PREVEND | Type: data systems | Type: proof of concept | Type: software engineering